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Flexible, fast and accurate sequence alignment profiling on GPGPU with PaSWAS

Flexible, fast and accurate sequence alignment profiling on GPGPU with PaSWAS

Samenvatting

To obtain large-scale sequence alignments in a fast and flexible way is an important step in the analyses of next generation sequencing data. Applications based on the Smith-Waterman (SW) algorithm are often either not fast enough, limited to dedicated tasks or not sufficiently accurate due to statistical issues. Current SW implementations that run on graphics hardware do not report the alignment details necessary for further analysis.

OrganisatieHanzehogeschool Groningen
LectoraatLife Sciences & Renewable Energy
Gepubliceerd inPLOS one Public Library of Science
Datum2015-04-01
TypeArtikel
ISSN1932-6203
TaalEngels

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