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DNA barcoding is an important molecular methodology for species identification that was developed over the last two decades and it should be covered inthe biology bachelor curriculum. Here, we present an example of DNA barcoding by sequencing a segment of the 28S nuclear ribosomal large subunitrRNA gene of wild mushrooms and framing the education in a project formfor undergraduate students in biology. Students perform this project in 6–8 weeks, which also includes preparing a poster, writing a report and presenting a paper related to the work in a journal club format. First, fieldwork in the Netherlands was carried out, during which students collected mushrooms under supervision of a professional mycologist with the goal to (a) verify morphologically based identifications with a molecular method and (b) assess phylogenetic relationships of the different species collected. Next, DNA extractions and quantitation were performed, PCR amplification was done, and samples were sent out for Sanger sequencing. Students aligned and analyzed thesequences using BLAST and Geneious and subsequently created a phylogenetic tree. In case of collecting DNA barcodes of an earlier sequenced species,students could upload the data to a repository established for facilitation of future research projects. The method described is very robust, reagents and equipment are readily available, and costs are relatively low. In addition, the results can be compared to published fungal phylogenetic trees.

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OrganisatieHogeschool Leiden
AfdelingFaculteit Techniek
LectoraatMetagenomics
Gepubliceerd inBiochemistry and Molecular Biology Education Wiley, Vol. 48, Pagina's: 404-410
Datum2020-05-18
TypeArtikel
DOI10.1002/bmb.21388
TaalEngels

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